broadinstitute / viral-pipelines

viral-ngs: complete pipelines
Other
60 stars 28 forks source link

Make create_enterics_qc_viz whitespace tolerant #517

Closed dpark01 closed 8 months ago

dpark01 commented 8 months ago

Bugfix: create_enterics_qc_viz broke on whitespace on any WDL inputs. This PR makes it resilient to whitespace on all inputs (at least as far as the WDL is concerned). This is particularly important for some user-immutable strings like workspace_name, project_name, input_table_name, etc.

Also remove user input for workspace_name and project_name and autodetect instead.