create_enterics_qc_viz simplify and improve portability

broadinstitute / viral-pipelines

viral-ngs: complete pipelines

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create_enterics_qc_viz simplify and improve portability #521

Closed jpramosbarroso closed 8 months ago

jpramosbarroso commented 8 months ago

Change create_enterics_qc_viz from taking Terra (GCP-only) project/workspace/table names and reading the data points directly via the FISS API to taking the data points as WDL inputs. This improves portability (to ToA and non-Terra environments) and eliminates a frequent opportunity for user error.

dpark01 commented 8 months ago

you've tested and it works live?

jpramosbarroso commented 8 months ago

@dpark01 yes — this has been tested and works live. see this run