broadinstitute / viral-pipelines

viral-ngs: complete pipelines
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scaffold_and_refine_multitaxa -- more thorough assembly outputs #524

Closed dpark01 closed 6 months ago

dpark01 commented 6 months ago

Fleshing out more of that assembly_stats_by_taxon tsv output with a number of additional useful outputs, making it ready for 1) TSV import into Terra as a new table and 2) downstream processing for genbank and data release.

Adds new workflow terra_tsv_to_table that simply calls the terra.upload_entities_tsv task