viral-assemble 2.3.1.3 to 2.3.1.4 -- see release notes for viral-assemble but this changes default parameters to cluster genomes more aggressively and also rank orders hits by ANI * reference bases covered instead of just ANI so as to not favor tiny matches over long ones
expose some skani parameters at the WDL task level
update nextclade_one_sample to emit more useful (non-empty) output strings for multi-segment viruses like influenza
add a taxid_to_nextclade workflow that takes a numeric NCBI taxid and converts it to a nextclade dataset name that can be used as the input value to nextclade_one_sample.dataset_name
ANI * reference bases coveredinstead of justANIso as to not favor tiny matches over long onesnextclade_one_sampleto emit more useful (non-empty) output strings for multi-segment viruses like influenzataxid_to_nextcladeworkflow that takes a numeric NCBI taxid and converts it to a nextclade dataset name that can be used as the input value tonextclade_one_sample.dataset_name