broadinstitute / viral-pipelines

viral-ngs: complete pipelines
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add workflow to download multiple SRA accessions to multiple bams: fetch_multiple_sra_to_bams #537

Open tomkinsc opened 5 months ago

tomkinsc commented 5 months ago

add workflow to download multiple SRA accessions to multiple bams: fetch_multiple_sra_to_bams

This is useful in the event a sample is associated with multiple sequencing runs (i.e. more than one SRR###). It also adjusts the Fetch_SRA_to_BAM task to find metadata for the requested run in the event multi-run metadata is returned for a given accession.