set the NCBI_API_KEY environment variable if a value is passed in as a task input
pass a user email address to esearch and efetch calls via the -email param (not necessary when an API key is used, but easy to obtain through introspection on Terra—if running on Terra—for users without an NCBI API key)
bugfix
fetch_sra_to_bam
task; API changes:-db sra
forefetch
call-q
to-query
foresearch
callChanges to be a better user of the NCBI API:
NCBI_API_KEY
environment variable if a value is passed in as a task inputesearch
andefetch
calls via the-email
param (not necessary when an API key is used, but easy to obtain through introspection on Terra—if running on Terra—for users without an NCBI API key)