broadinstitute / viral-pipelines

viral-ngs: complete pipelines
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Update polyphonia input parameters and defaults #545

Closed lakras closed 3 months ago

lakras commented 3 months ago

Polyphonia has been updated to identify inter-sample contamination using the proportion of genome-defining positions at which the contaminating alleles appear as minor alleles in the contaminated sample. This pull request updates the input parameters and defaults accordingly.