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viral-pipelines
viral-ngs: complete pipelines
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demux_deplete small updates
#552
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dpark01
closed
2 months ago
dpark01
commented
2 months ago
This PR:
now adds raw and cleaned read counts to Terra
library
table
small fix to ensure more output tsvs use unix newlines (csv.DictWriter tends to default otherwise)
fail properly on task create_or_update_sample_tables when failures are encountered in python code
bugfix for preparing sample -> library mapping when
library_table_name
is set to non-default value
This PR:
librarytablelibrary_table_nameis set to non-default value