PD-2559andPD-2558: UMI filtering and cell barcode correction

aawdeh commented 5 months ago

Combined two tickets into one to test out changes and merge changes combined

Tackling both UMI filtering and cell barcode correction

Changed/Added starsolo parameters:

soloCBmatchWLtype is now set to1MM_multi
soloUMIdedup is now set to 1MM_CR
soloUMIfiltering is now set to MultiGeneUMI_CR

Smart tests failed on: dev_10k_pbmc_downsampled, pbmc_human_v3, mouse_v2_snRNA_example and snRNA_mouse_v2_snRNA_example

Notebook to compare failed smart tests: https://app.terra.bio/#workspaces/warp-pipelines/Multiome-test-workspace/analysis/launch/PD2559_PD2558_umi_filtering_and_cell_barcode_correction.ipynb?mode=edit

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github-actions[bot] commented 5 months ago

Remember to squash merge!

github-actions[bot] commented 5 months ago

Remember to squash merge!