We want to remove the input vcf index and just create the index as part of a task.
We want to make the beagle tool deterministic so we provide a value for nthreads and seed
Checklist
If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.
[ ] Did you add inputs, outputs, or tasks to a workflow?
[ ] Did you modify, delete or move: file paths, file names, input names, output names, or task names?
[ ] If you made a changelog update, did you update the pipeline version number?
Description
We want to remove the input vcf index and just create the index as part of a task. We want to make the beagle tool deterministic so we provide a value for nthreads and seed
Checklist
If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.