Closed aawdeh closed 1 month ago
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
snm3C.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
snm3C.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed
Added new task called
Summary_PerCellOutput
to output the files as final outputs of the pipeline at a cell level:all_reads_3C_contacts
,name_sorted_bam
,unique_reads_cgn_extraction_allc
,unique_reads_cgn_extraction_allc_extract
,unique_reads_cgn_extraction_tbi
andunique_reads_cgn_extraction_tbi_extract
Removed
hisat3n_dna.all_reads.dedup_contact
andchromatin_contact_stats
as requested by Ecker labChecklist
If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.