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broadinstitute / warp

WDL Analysis Research Pipelines
https://broadinstitute.github.io/warp
BSD 3-Clause "New" or "Revised" License
200 stars 93 forks source link

Multiome keeper cell metrics #1303

Closed ekiernan closed 1 month ago

ekiernan commented 1 month ago

Description

This PR adds library-level keeper cell metrics to the Multiome and Optimus workflows. It is related to this ticket: https://broadworkbench.atlassian.net/jira/software/projects/PD/boards/167?selectedIssue=PD-2653

github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not been changed and needs updating
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Multiome.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
ekiernan commented 1 month ago

retest this please

github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not been changed and needs updating
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Multiome.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Multiome.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Multiome.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not been changed and needs updating
Multiome.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
PairedTag.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
PairedTag.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.
github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.
nikellepetrillo commented 1 month ago

@ekiernan looks good! is this new docker in azure as well?

github-actions[bot] commented 1 month ago

Remember to squash merge!

github-actions[bot] commented 1 month ago

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.
github-actions[bot] commented 1 month ago

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
ekiernan commented 1 month ago

@ekiernan looks good! is this new docker in azure as well?

It should have auto-built and pushed to ACR from warp-tools