github-actions[bot]
commented
1 month ago Remember to squash merge!
Open meganshand opened 1 month ago
github-actions[bot]
commented
1 month ago Remember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
CEMBA.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
VariantCalling.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
CEMBA.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
VariantCalling.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
CEMBA.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
VariantCalling.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
PairedTag.wdl has not been changed and needs updating
atac.wdl has not had its version updated
Multiome.wdl has not been changed and needs updating
CEMBA.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
VariantCalling.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
meganshand
commented
1 month ago retest this please
github-actions[bot]
commented
1 month ago Remember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
ExomeGermlineSingleSample.wdl has not been changed and needs updating
VariantCalling.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
CEMBA.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
CEMBA.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
ExomeGermlineSingleSample.wdl has not been changed and needs updating
VariantCalling.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
CEMBA.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
CEMBA.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 month ago Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
CEMBA.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedComparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
ExomeGermlineSingleSample.wdl has not had its version updated
VariantCalling.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
CEMBA.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 month ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
ExomeGermlineSingleSample.wdl has not had its version updated
VariantCalling.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
IlluminaGenotypingArray.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
CEMBA.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
CEMBA.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
2 weeks ago Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedComparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
CEMBA.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
VariantCalling.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
IlluminaGenotypingArray.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
1 week ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
CEMBA.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
VariantCalling.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
IlluminaGenotypingArray.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failedRemember to squash merge!
github-actions[bot]
commented
2 days ago Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
CEMBA.wdl has not had its version updated
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
GDCWholeGenomeSomaticSingleSample.wdl has not had its version updated
ExomeGermlineSingleSample.wdl has not had its version updated
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
VariantCalling.wdl has not had its version updated
UltimaGenomicsJointGenotyping.wdl has not had its version updated
ReblockGVCF.wdl has not had its version updated
JointGenotypingByChromosomePartOne.wdl has not been changed and needs updating
JointGenotypingByChromosomePartTwo.wdl has not been changed and needs updating
JointGenotyping.wdl has not had its version updated
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
IlluminaGenotypingArray.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
ValidateChip.wdl has not been changed and needs updating
Imputation.wdl has not been changed and needs updating
RNAWithUMIsPipeline.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
BroadInternalImputation.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
AnnotationFiltration.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failedComparing changelogs for pipelines that differ from the versions on 'origin/develop':
CEMBA.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
GDCWholeGenomeSomaticSingleSample.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
UltimaGenomicsJointGenotyping.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartOne.changelog.md has not been changed and needs to be updated
JointGenotypingByChromosomePartTwo.changelog.md has not been changed and needs to be updated
JointGenotyping.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
ValidateChip.changelog.md has not been changed and needs to be updated
Imputation.changelog.md has not been changed and needs to be updated
RNAWithUMIsPipeline.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
BroadInternalImputation.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
AnnotationFiltration.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
There are changes in the most recent GATK release that I'd like for the BGE pipeline, so this is a draft PR that changes it everywhere from 4.5.0.0 -> 4.6.0.0 so that I can track broken tests in a centralized place (which we expect for at least the JointGenotyping pipelines).