Closed nikellepetrillo closed 1 month ago
Remember to squash merge!
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
IlluminaGenotypingArray.wdl has not been changed and needs updating
ExomeReprocessing.wdl has not been changed and needs updating
WholeGenomeReprocessing.wdl has not been changed and needs updating
ExternalExomeReprocessing.wdl has not been changed and needs updating
ExternalWholeGenomeReprocessing.wdl has not been changed and needs updating
BroadInternalUltimaGenomics.wdl has not been changed and needs updating
BroadInternalRNAWithUMIs.wdl has not been changed and needs updating
BroadInternalArrays.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeCramOnly.wdl has not been changed and needs updating
VariantCalling.wdl has not been changed and needs updating
ReblockGVCF.wdl has not been changed and needs updating
ExomeGermlineSingleSample.wdl has not been changed and needs updating
UltimaGenomicsWholeGenomeGermline.wdl has not been changed and needs updating
WholeGenomeGermlineSingleSample.wdl has not been changed and needs updating
CheckFingerprint.wdl has not been changed and needs updating
Arrays.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
ExomeReprocessing.changelog.md has not been changed and needs to be updated
WholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalExomeReprocessing.changelog.md has not been changed and needs to be updated
ExternalWholeGenomeReprocessing.changelog.md has not been changed and needs to be updated
BroadInternalUltimaGenomics.changelog.md has not been changed and needs to be updated
BroadInternalRNAWithUMIs.changelog.md has not been changed and needs to be updated
BroadInternalArrays.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeCramOnly.changelog.md has not been changed and needs to be updated
VariantCalling.changelog.md has not been changed and needs to be updated
ReblockGVCF.changelog.md has not been changed and needs to be updated
ExomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
UltimaGenomicsWholeGenomeGermline.changelog.md has not been changed and needs to be updated
WholeGenomeGermlineSingleSample.changelog.md has not been changed and needs to be updated
CheckFingerprint.changelog.md has not been changed and needs to be updated
Arrays.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
ExternalExomeReprocessing.wdl and ExternalExomeReprocessing.changelog.md do not have matching versions
Some WDLs or changelog files need updating. See output for details.
validation_failed
Remember to squash merge!
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.
Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.
Description
We have been seeing CalculateReadGroupChecksum fail with an out of resource error in our WGS/Exome germline single sample scientific tests. This PR adds more disk and mem and helps the pipeline get through CalculateReadGroupChecksum.
Checklist
If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.