added nhash_id to multiome, optimus, paired-tag, and atac

[ekiernan]

Description

Adding NHash ID as input to BICAN workflows

This PR add optional nhash_id to Optimus, ATAC, Multiome, and Paired-tag workflows. It outputs the nhash_id to the h5ads in the adata.uns section and the gene expression library-level metrics (first line). It also names the library metrics CSV using the nhash_id.

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
atac.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
atac.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not had its version updated
atac.wdl has not had its version updated
Multiome.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not had its version updated
atac.wdl has not had its version updated
Multiome.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not had its version updated
atac.wdl has not had its version updated
Multiome.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not had its version updated
atac.wdl has not had its version updated
Multiome.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not had its version updated
atac.wdl has not had its version updated
Multiome.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
Optimus.wdl has not had its version updated
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
PairedTag.wdl has not had its version updated
atac.wdl has not had its version updated
Multiome.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Optimus.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
atac.changelog.md has not been changed and needs to be updated
Multiome.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

[github-actions[bot]]

Remember to squash merge!

[github-actions[bot]]

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

[github-actions[bot]]

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

[ekiernan]

retest this please

[ekiernan]

retest this please