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broadinstitute
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warp
WDL Analysis Research Pipelines
https://broadinstitute.github.io/warp
BSD 3-Clause "New" or "Revised" License
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Lk pd 2744
#1372
ekiernan
opened
6 hours ago
3
WARP Doc Site Updates
#1371
ekiernan
closed
6 hours ago
9
updates to BGE joint calling pipeline from GVS tieout
#1370
meganshand
opened
2 days ago
11
Staging -> master
#1369
nikellepetrillo
closed
1 day ago
5
dev -> staging
#1368
nikellepetrillo
closed
2 days ago
3
added --preserve-map-align-order
#1367
ekiernan
closed
2 days ago
4
staging --> master
#1366
ekiernan
closed
2 days ago
3
dev -> staging
#1365
nikellepetrillo
closed
3 days ago
6
adding 10x wrapper function
#1364
ekiernan
closed
6 days ago
40
Np loom to h5ad snss2
#1363
nikellepetrillo
closed
13 hours ago
51
Lk pd 2736 doublets
#1362
ekiernan
opened
3 weeks ago
21
adding cell calls as output of merge star outputs for calling cells
#1361
ekiernan
closed
3 weeks ago
6
Np lk pd 2726
#1360
nikellepetrillo
closed
3 weeks ago
7
Lk pd 2726
#1359
ekiernan
opened
4 weeks ago
51
Np add firecloud api scripts
#1358
nikellepetrillo
closed
4 weeks ago
6
Kp gha terra auth pd 2682
#1357
kevinpalis
opened
1 month ago
51
Update tasks and tools table with Summary_PerCellOutput
#1356
gsenior09
opened
1 month ago
4
staging --> master
#1355
ekiernan
closed
1 month ago
4
dev --> staging
#1354
ekiernan
closed
1 month ago
6
PD-2721: Add checks for empty cells
#1353
aawdeh
closed
4 weeks ago
94
Np pd 2505 demultiplexing file existence
#1352
nikellepetrillo
closed
1 month ago
15
Pd-2577 Add new mitochondrial metrics into warp-tool's tagsort cell and gene metrics calcluations
#1351
khajoue2
closed
1 month ago
6
Lk pd 2727 mitochondria
#1350
ekiernan
closed
1 month ago
19
pin all latest docker versions
#1349
nikellepetrillo
closed
1 month ago
12
Np add library level metrics tests
#1348
nikellepetrillo
closed
1 month ago
7
TSPS-293: Fix up streaming imputation beagle
#1347
mmorgantaylor
closed
1 month ago
1
dev -> staging
#1346
nikellepetrillo
closed
1 month ago
3
Np add cloud provider to more wgs and exome pipelines
#1345
nikellepetrillo
closed
1 month ago
3
Kp adding version txt automation pd 2596
#1344
kevinpalis
closed
1 month ago
17
dev -> staging
#1343
nikellepetrillo
closed
1 month ago
3
Np adding cloud provider to sci tests
#1342
nikellepetrillo
closed
1 month ago
6
Np add additional testing to snm3c
#1341
nikellepetrillo
closed
1 month ago
7
Remove PullApprove
#1340
jessicaway
closed
1 month ago
6
Lk remove warp email from docs
#1339
ekiernan
closed
1 month ago
6
Move atac to be its own independent pipeline
#1338
nikellepetrillo
closed
1 month ago
19
staging --> master
#1337
ekiernan
closed
1 month ago
10
Lk pd 2654 tso metrics
#1336
ekiernan
closed
1 month ago
40
TSPS-269 Speed up CountVariantsInChunksBeagle by using bedtools
#1335
mmorgantaylor
closed
1 month ago
2
dev --> staging
#1334
ekiernan
closed
1 month ago
9
[DRAFT] TSPS-183 Beagle imputation hg38 wdl and associated support wdls
#1333
mmorgantaylor
opened
1 month ago
10
basename fix for imputation beagle ref panel generation
#1332
mmorgantaylor
closed
1 month ago
1
parsing error in WGS single sample workflow
#1331
ekiernan
opened
1 month ago
6
Make ReblockGVCFs more robust to large inputs
#1330
meganshand
closed
1 month ago
18
Release Automation Branch Detection Fix
#1329
kevinpalis
closed
2 months ago
3
Keep running into this error when running IlluminaGenotypingArray.wdl (/usr/lib/libstdc++.so.6: no version information available (required by /usr/gitc/iaap/iaap-cli/iaap-cli))
#1328
seetarajpara
opened
2 months ago
0
Np remove ss2 testing
#1327
nikellepetrillo
closed
1 month ago
10
PD-2664: Add warp-develop-release-to-github to Github Actions
#1326
aawdeh
closed
2 months ago
3
PD-2664: Add warp-develop-release-to-github to Github Actions
#1325
aawdeh
closed
2 months ago
3
Testing
#1324
aawdeh
closed
2 months ago
11
Testing
#1323
aawdeh
closed
2 months ago
3
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