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broadinstitute
/
wot
A software package for analyzing snapshots of developmental processes
https://broadinstitute.github.io/wot/
BSD 3-Clause "New" or "Revised" License
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Calculating minimum transport distance between cells without time information
#107
Hilarialy
opened
4 months ago
0
Error in visualizing trajectory
#106
hanjun98
opened
9 months ago
3
Error in visualizing trajectory
#105
Kei-kamo
closed
1 year ago
3
Some questions about normalization
#104
809825706
opened
1 year ago
0
Overflow encountered in duality gap computation, please report this incident
#103
davhum
opened
1 year ago
0
Avoid computing PCA when using a custom cost matrix
#102
matthieuheitz
opened
1 year ago
0
Differential expression across different timepoints and fates forward in time
#101
matthieuheitz
opened
1 year ago
0
Are all genes or highly variable genes used as input expression matrix in Waddington-OT?
#100
Mingsenli
opened
2 years ago
1
How to adjust raw data to this format
#99
tar-art
opened
2 years ago
1
Can't replicate data preprocessing
#98
morphy380
opened
2 years ago
2
pg.neighbors(adata_var) error
#97
noobugs
opened
2 years ago
2
cell_growth_rates not passed on command line
#96
MikeDMorgan
opened
2 years ago
0
Simplify updating `ot_configs`
#95
WeilerP
opened
3 years ago
0
`wot.ot.OTModel` does not fail with random arguments
#94
WeilerP
opened
3 years ago
0
Error met when running Notebook-1-FLE-cell_sets-gene_sets.ipynb
#93
WBY20
opened
3 years ago
0
replacing real time with pseudotime
#92
Alexgr97
opened
3 years ago
0
WOT integration as an external kernel in CellRank
#91
Marius1311
closed
3 years ago
12
Overflow warnings
#90
ShouWenWang
opened
3 years ago
5
What is the difference between fate probability and ancestor probability?
#89
jma1991
opened
3 years ago
1
Reading mtx file
#88
hiraksarkar
opened
3 years ago
1
Preparation of expression matrix
#87
jma1991
opened
3 years ago
4
Custom Cost Matrices
#86
Jabbath
closed
3 years ago
0
Interpreting WOT ancestors and trajectory probabilities
#85
dkeitley
closed
2 years ago
0
where to choose number of PCA to compute transport map?
#84
hahia
closed
4 years ago
3
FutureWarning frome anndata
#83
hahia
opened
4 years ago
0
'AnnData' object has no attribute 'to_anndata'
#82
hahia
closed
4 years ago
3
error in wot.tmap.TransportMapModel.from_directory(TMAP_PATH)
#81
rosshandler
closed
4 years ago
10
ExprMatrix.h5ad file
#80
sunliang3361
opened
4 years ago
0
Overflow encountered in duality gap computation
#79
alyosama
closed
4 years ago
2
Using wot on scATAC data?
#78
smanne07
opened
4 years ago
2
problem on install wot
#77
llx174
opened
4 years ago
1
'cells_by_gene_set' - all cell types have the same number of cells
#76
mbk0asis
closed
4 years ago
1
Composing couplings and transport maps explanations
#75
pausrrls
opened
4 years ago
0
"Download tutorial input data" cannot be found
#74
ShouWenWang
closed
4 years ago
1
duality_gap overflow
#73
MikeDMorgan
closed
4 years ago
6
diff_exp not working after updating wot
#72
rosshandler
opened
4 years ago
9
wot: error: argument command: invalid choice: 'neighborhood_graph'
#71
mbk0asis
closed
4 years ago
6
I can't install
#70
wodanaz
opened
4 years ago
5
Use of Timepoint Metadata
#69
jogiles
opened
4 years ago
3
Modify read_anndata to read cellranger v3 matrices
#68
gabprg
closed
4 years ago
2
Read dataset from 10x h5 file
#67
Huang-XN
closed
4 years ago
1
create new cell sets in notebook 1
#66
yeroslaviz
opened
5 years ago
0
trajectories fail except from final time point
#65
concatenize
closed
5 years ago
1
trajectory plots unidentifiable.
#64
yeroslaviz
opened
5 years ago
2
tmap_model.trajectories fails with two time points
#63
concatenize
closed
5 years ago
1
calculting trajectories gives a warning "Variable names are not unique"
#62
yeroslaviz
closed
5 years ago
1
error calculating gene_set scores "IndexError: tuple index out of range"
#61
yeroslaviz
closed
5 years ago
1
import error "from scipy.sparse.sputils import IndexMixin"
#60
yeroslaviz
opened
5 years ago
1
Installation error on MacOSX
#59
ghoshal
closed
5 years ago
5
Update tutorial.html
#58
yeroslaviz
closed
5 years ago
0
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