brouwern
commented
2 years ago In this case cleaning refers to elements of each FASTA sequence that are being removed This is done by fasta_cleaner The fetch and fertch_list functions just get the raw sequences, the same as if you copy and pasted them from the website.
On Sat, Oct 2, 2021 at 7:35 PM springday101 @.***> wrote:
Code by Nathan Brouwer. When you say that the fetch function is "cleaning" the data, do you mean that it is consolidating all of the data into smaller groups based on certain categories? Or, is it somehow editing the data into a more understandable format?
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Lecturer
Department of Biological Sciences https://www.biology.pitt.edu/
University of Pittsburgh
Biostatistics course: brouwern.github.io/BIOSC_1120/index.html
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National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation
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https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L284
Code by Nathan Brouwer. When you say that the fetch function is "cleaning" the data, do you mean that it is consolidating all of the data into smaller groups based on certain categories? Or, is it somehow editing the data into a more understandable format?