brouwern / compbio2021

Assignments for Computational Biology Fall 2021 at the University of Pittsburgh
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Mac - Apple M1 - msa issue #27

Open aes-186 opened 3 years ago

aes-186 commented 3 years ago

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L143

https://support.bioconductor.org/p/9137290/ ^ I was originally having trouble with loading the msa package from Bioconductor, but when I re-downloaded R https://cran.r-project.org/bin/macosx/ from this site using the R.4.1.1.pkg instead of the R.4.1.1.-arm64.pkg it worked!

brouwern commented 3 years ago

Awesome! Will pass this on. I didn’t think about there being an issue there. I always have to look up what order the OS were released and still sometimes download the wrong software for my version. I live a lot of things about macs and prefer to run arming a Mac, but sometimes Apple is too cute for their own good.

On Sat, Oct 2, 2021 at 10:04 PM aes-186 @.***> wrote:

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L143

https://support.bioconductor.org/p/9137290/ ^ I was originally having trouble with loading the msa package from Bioconductor, but when I re-downloaded R https://cran.r-project.org/bin/macosx/ from this site using the R.4.1.1.pkg instead of the R.4.1.1.-arm64.pkg it worked!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/brouwern/compbio2021/issues/27, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB32NE6A3XEM2KWCENQSF7TUE624NANCNFSM5FHBF7FQ .

--

Nathan L. Brouwer, PhD

@.***

Lecturer

Department of Biological Sciences https://www.biology.pitt.edu/

University of Pittsburgh

Biostatistics course: brouwern.github.io/BIOSC_1120/index.html

Research Associate

National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation

R code: github.com/brouwern

R tweets: @lobrowR https://twitter.com/lobrowR

brouwern commented 3 years ago

Also, was the problem that you originally download the wrong version, or does the correct one for your OS not work but the newer one does?

On Sat, Oct 2, 2021 at 10:04 PM aes-186 @.***> wrote:

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L143

https://support.bioconductor.org/p/9137290/ ^ I was originally having trouble with loading the msa package from Bioconductor, but when I re-downloaded R https://cran.r-project.org/bin/macosx/ from this site using the R.4.1.1.pkg instead of the R.4.1.1.-arm64.pkg it worked!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/brouwern/compbio2021/issues/27, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB32NE6A3XEM2KWCENQSF7TUE624NANCNFSM5FHBF7FQ .

--

Nathan L. Brouwer, PhD

@.***

Lecturer

Department of Biological Sciences https://www.biology.pitt.edu/

University of Pittsburgh

Biostatistics course: brouwern.github.io/BIOSC_1120/index.html

Research Associate

National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation

R code: github.com/brouwern

R tweets: @lobrowR https://twitter.com/lobrowR

aes-186 commented 3 years ago

The correct one for my OS apparently has issues with Bioconductor packages, but the non-arm64 version seems to work.