brouwern
commented
2 years ago Go to the top of you file first will be the yaml header you pasted in. Next will probably be 2 small code chunks both which will probably start with something like
‘’’{r setup etc} Some code ‘’’
If there are 2 chunks delete one of the chunks (all of it, everything between the two sets of ‘’’)
If this doesn’t make sense or it doesn’t describe what’s going on you can do a search within the text (eg control+F, cmd+F). The place to type the word will show up at the top of the script. You should find two code chunks both with the word setup in them after the ticks. Delete one of the words setup. Let me know if this doesn’t work.
On Sat, Sep 25, 2021 at 8:28 PM deekshasesha @.***> wrote:
I am trying to knit my code and am getting this error:
processing file: Portfolio1PartA.Rmd Error in parse_block(g[-1], g[1], params.src, markdown_mode) : Duplicate chunk label 'setup', which has been used for the chunk: knitr::opts_chunk$set(echo = TRUE) Calls: ... process_file -> split_file -> lapply -> FUN -> parse_block Execution halted
How do I fix this? My code works up to entrez_file_list
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Nathan L. Brouwer, PhD
@.***
Lecturer
Department of Biological Sciences https://www.biology.pitt.edu/
University of Pittsburgh
Biostatistics course: brouwern.github.io/BIOSC_1120/index.html
Research Associate
National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation
R code: github.com/brouwern
R tweets: @lobrowR https://twitter.com/lobrowR
deekshasesha
I am trying to knit my code and am getting this error:
processing file: Portfolio1PartA.Rmd Error in parse_block(g[-1], g[1], params.src, markdown_mode) : Duplicate chunk label 'setup', which has been used for the chunk: knitr::opts_chunk$set(echo = TRUE) Calls: ... process_file -> split_file -> lapply -> FUN -> parse_block
Execution halted
How do I fix this? My code works up to entrez_file_list