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brouwern / compbio2021

Assignments for Computational Biology Fall 2021 at the University of Pittsburgh
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Why use a for() loop instead of vectorization? #36

Open sevs617 opened 2 years ago

sevs617 commented 2 years ago

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L495

brouwern commented 2 years ago

a list works better for this workflow. the normal output of an vectorized input into entrez_fetch is a single fasta file. it would be nice if entrez_fetch had an arguement to chose the form of the output. wouldn't be hard to implement probably- I should write it up and suggest it to the author's of rentrez

On Mon, Oct 4, 2021 at 11:06 AM sevs617 @.***> wrote:

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L495

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Department of Biological Sciences https://www.biology.pitt.edu/

University of Pittsburgh

Biostatistics course: brouwern.github.io/BIOSC_1120/index.html

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National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation

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