brouwern
commented
2 years ago msa is from msa(). it relies on some functionality from Biostrings i think so it uses Biostrings as a dependency. ggmsa takes a MSA input, whether its from the msa package or another piece of MSA software. ggmsa could be optimized to work more smoothly with msa::msa() so that the little prep steps could be eliminated.
On Mon, Oct 4, 2021 at 11:19 AM zaf18 @.***> wrote:
Does the msa() function come from the msa package? Or is it from Biostrings or even ggmsa perhaps?
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https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/MSA-walkthrough-assignment-part01.Rmd#L383
Does the msa() function come from the msa package? Or is it from Biostrings or even ggmsa perhaps?