brouwern / compbio2021

Assignments for Computational Biology Fall 2021 at the University of Pittsburgh
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Viewing the MSA #5

Open rashiranjan opened 3 years ago

rashiranjan commented 3 years ago

https://github.com/brouwern/compbio2021/blob/0056a94236f0f24cc236f89ebfbae8b0d6de9d49/MSA-walkthrough-assignment-part01.Rmd#L388

I've got a question about viewing the MSA. Since I've only been able to run it in RStudio Cloud, I'm not sure what the output is supposed to look like. The alignment just appears in my output window, not in a separate plot. How can I fix this?

brouwern commented 3 years ago

You can skip everything related to the msa for now. Comment out code as needed

On Mon, Sep 27, 2021 at 9:14 PM Rashi Ranjan @.***> wrote:

https://github.com/brouwern/compbio2021/blob/0056a94236f0f24cc236f89ebfbae8b0d6de9d49/MSA-walkthrough-assignment-part01.Rmd#L388

I've got a question about viewing the MSA. Since I've only been able to run it in RStudio Cloud, I'm not sure what the output is supposed to look like. The alignment just appears in my output window, not in a separate plot. How can I fix this?

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Lecturer

Department of Biological Sciences https://www.biology.pitt.edu/

University of Pittsburgh

Biostatistics course: brouwern.github.io/BIOSC_1120/index.html

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National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation

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