brouwern
commented
2 years ago I haven’t played around much but you can do any kind of search that that Ncbi can. Genes genomes ESTs publications etc. the documentation for the package is very good
On Mon, Oct 4, 2021 at 7:29 PM Benjamin Solomon @.***> wrote:
https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/MSA-walkthrough-assignment-part01.Rmd#L101 Mouse shroom 3a (M. musculus)
mShroom3a <- entrez_fetch(db = "protein", id = "AAF13269", rettype = "fasta")
I know there is protein and probably DNA, but are there any other db options to choose from?
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https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/MSA-walkthrough-assignment-part01.Rmd#L101
Mouse shroom 3a (M. musculus)
mShroom3a <- entrez_fetch(db = "protein", id = "AAF13269", rettype = "fasta")
I know there is protein and probably DNA, but are there any other db options to choose from?