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brouwern / compbio2021

Assignments for Computational Biology Fall 2021 at the University of Pittsburgh
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FASTA #75

Open varunsun opened 2 years ago

varunsun commented 2 years ago

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/MSA-walkthrough-assignment-part01.Rmd#L141

I am still a bit unsure exactly what the FASTA function is "cleaning."

brouwern commented 2 years ago

the header with the name of the sequence and the newline characters. its basically taking anything that isn't sequence info out, like the name of the spp, the accession etc

On Tue, Oct 5, 2021 at 10:47 AM varunsun @.***> wrote:

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/MSA-walkthrough-assignment-part01.Rmd#L141

I am still a bit unsure exactly what the FASTA function is "cleaning."

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Nathan L. Brouwer, PhD

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Lecturer

Department of Biological Sciences https://www.biology.pitt.edu/

University of Pittsburgh

Biostatistics course: brouwern.github.io/BIOSC_1120/index.html

Research Associate

National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation

R code: github.com/brouwern

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