brouwern / compbio2021

Assignments for Computational Biology Fall 2021 at the University of Pittsburgh
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Comment on Workflow Key #77

Open jhh35 opened 2 years ago

jhh35 commented 2 years ago

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L851

Are there specific ways to get different shapes of phylogenetic trees in the output depending on how we want them formatted? If so, are there specific functions for them or do we just need to modify ones that we have used before?

SaumikaM commented 2 years ago

As far as I know there are rooted and unrooted trees, and you can change whether the tree is rooted or unrooted, which changes the shape.

brouwern commented 2 years ago

yes, there are ways to tweak layout but it does take time to code. I think many people use online editors that let you click and drag/rotate things to be how you want them, but stubborn coders try to figure out to to write it all out : )

On Tue, Oct 5, 2021 at 11:02 AM Jared Harris @.***> wrote:

https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L851

Are there specific ways to get different shapes of phylogenetic trees in the output depending on how we want them formatted? If so, are there specific functions for them or do we just need to modify ones that we have used before?

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University of Pittsburgh

Biostatistics course: brouwern.github.io/BIOSC_1120/index.html

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National Aviary, Dept. of Conservation & Field Research https://www.aviary.org/conservation

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