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browning-lab / flare

The flare program performs local ancestry inference
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More distribution options #1

Closed troycomi closed 10 months ago

troycomi commented 2 years ago

I'm interested in trying out flare. Any chance you can make a docker image to simplify installation and versioning?

Can you make a release containing the jar through github as well?

I'm worried directly downloading the linked file won't be reproducible with new versions and compiling at a specific commit makes distribution difficult.

thebigcorporation commented 1 year ago

I am working on a docker file, but I am seeing the following build failures with Java 11 and Java 17 (both current LTS).

I was going to generate a PR with that docker file, but haven't had time to dig into this much deeper. If anyone has a quick fix, we can close on this.

Thanks

Sven

Step 12/17 : RUN javac -cp flare/src/ flare/src/admix/AdmixMain.java ---> Running in f32ea778c163 flare/src/admix/IbsHaps.java:36: error: unmappable character (0xE2) for encoding US-ASCII

thebigcorporation commented 1 year ago

Please see: https://github.com/browning-lab/flare/pull/5