Ask questions about filtering genotype data

browning-lab / hap-ibd

The hap-ibd program detects identity-by-descent segments in phased genotype data.

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Ask questions about filtering genotype data #5

Closed chywish closed 2 years ago

chywish commented 2 years ago

Thank you for the excellent software you developed, I tested it and it works very fast. I have a question, what should I do with the input genotype data if I want to analyze IBD fragments? Whether it is necessary to eliminate individuals with third-pedigree relationships before phasing, as described in the software article？ Can you give me some advice？ thanks

browning-lab commented 2 years ago

It is not necessary to eliminate closely-related individuals from your data set. Please e-mail analysis-related questions directly to the author's e-mail address.