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browning-lab / hap-ibd

The hap-ibd program detects identity-by-descent segments in phased genotype data.
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Add a Gradle-based build #6

Open pettyalex opened 2 years ago

pettyalex commented 2 years ago

Add a basic Gradle build, automating the build process to create an executable jar.

This should make it easier and more approachable for people to quickly check out and run this project. I can update the documentation as well if you're interested in merging this.

This allows the project to be built and run through ./gradlew run on UNIX-y platforms or ./gradlew.bat run on Windows, or packaged into an executable jar through ./gradlew assemble.

pettyalex commented 2 years ago

Thanks for the interest! I'll shoot you an email. There's no urgency to this PR, I just wanted to contribute it upstream. I ran into a weird edge case running hap-ibd in the All of Us Environment where we wanted to be able to add some additional logging, and setting up Gradle was a quick and easy way to make iterating and tweaking hap-ibd easier.