shapeit4 output includes cM for each marker in the INFO column, like so:
##INFO=<ID=CM,Number=A,Type=Float,Description="Interpolated cM position">
This PR adds a new flag: vcf-has-cm, which will use the genetic position reported from the VCF file, rather that needing a genetic map and interpolating. This allows directly using the reported genetic position for each marker.
I know that you prefer email, so I'm sending one with more context.
shapeit4 output includes cM for each marker in the INFO column, like so:
This PR adds a new flag: vcf-has-cm, which will use the genetic position reported from the VCF file, rather that needing a genetic map and interpolating. This allows directly using the reported genetic position for each marker.
I know that you prefer email, so I'm sending one with more context.