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Can not knit RTEAnalytics-Sergey-01.Rmd #16

Closed Sefimenko closed 8 years ago

Sefimenko commented 8 years ago

Dear Theos, I tried to find the solution in stackoverflow but I failed to find/understand/implement/ Could you please help us with the following:

I would like to knit RTEAnalytics-Sergey-01.Rmd including this chunks:

m1<-gvisTable(regression_data,options=list(showRowNumber=TRUE,width=1920, height=min(400,27*(nrow(regression_data)+1)),allowHTML=TRUE,page='disable'))
print(m1,'chart')

and 

library(corrplot)
corrplot(cor(regression_data[1:25]), method = "color", type="upper", order="original", tl.col="black", tl.srt=70)

...but I constantly get such errors as:

processing file: RTEAnalytics-Sergey-01.Rmd (*) NOTE: I saw chunk options "echo=TRUE, eval=TRUE, comment=NA, warning=FALSE, message=FALSE, results='asis<U+2019>" please go to http://yihui.name/knitr/options (it is likely that you forgot to quote "character" options) Error in base::parse(text = code, srcfile = NULL) : 1:80: unexpected INCOMPLETE_STRING 1: alist( echo=TRUE, eval=TRUE, comment=NA, warning=FALSE, message=FALSE, results='asis<U+2019> ) ^ Calls: ... withCallingHandlers -> eval -> parse_only -> Execution halted

... I also got errors that were specific to corrplot and gvisTable functions

Thanks, Sergey

tevgeniou commented 8 years ago

i see no problem when knit the file after making only these changes - so it also runs the lines needed:

m1<-gvisTable(regression_data,options=list(showRowNumber=TRUE,width=1920, height=min(400,27*(nrow(regression_data)+1)),allowHTML=TRUE,page='disable'))
print(m1,'chart')

library(corrplot)
corrplot(cor(regression_data[1:25]), method = "color", type="upper", order="original", tl.col="black", tl.srt=70)

in the note above there is a quote missing after "asis". should be results='asis' (it also says "(it is likely that you forgot to quote "character" options)").

also, better not to use the table for the whole (large) matrix regression_data. it is too big to be loaded on html

dim(regression_data) [1] 52608 28

show only, say, the first 100 or 1000 rows or so. m1<-gvisTable(regression_data[1:100,],options=list(showRowNumber=TRUE,width=1920,