@export annotations to nodes/arrays in Godot 4.1.1 game (Buckshot Roulette) export do not work correctly

[zUltimaPG3D]

System information

Linux Mint 21.1 (Vera)

Issue description

Opening the output project in the Godot version given by the program (or an even newer one, same issue anyways), which is Godot 4.1.1, at first glance nothing is wrong, yet all references to nodes in @exported variables (and only some arrays) are "incorrect" and the engine thinks of them as Nil unless they're reselected manually (or every item is put in manually, in the case of arrays).

Steps to reproduce

• Open GDRE, click Recover project... and select the game's EXE
• Let the export go through, and open the project in Godot 4.1.1
• Start the game (and tab out, since it starts in exclusive fullscreen) to see the Godot editor with the error Invalid set index 'visible' (on base 'Nil') with value of type 'bool'.

Recovery log

gdre_export.log

Minimal reproduction project

Game I attempted this on: https://mikeklubnika.itch.io/buckshot-roulette

[zUltimaPG3D]

Found the issue for the node references, for some reason the node_paths property isn't set in the .tscn file and resetting the values in the editor puts them there. Still don't know why the arrays don't export sometimes.