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bryanhe / ST-Net

Deep learning on histopathology images.
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Cannot find "_Coords.tsv" file #5

Open Vidushi-0617 opened 3 years ago

Vidushi-0617 commented 3 years ago

Hi

I am trying to replicate stnet results on the original data. While running python3 -m stnet prepare spatial the code asks for _coords.tsv file which is not present in the datasets. Do I need to create it from the metadata or can I download it from some source?

Please help

Thanks

chenyang1999 commented 3 years ago

I am also @Vidushi-0617 @bryanhe

engrodawood commented 3 years ago

Reached the same point where you are @chenyang1999 @Vidushi-0617 . Have you got any solution

Vidushi-0617 commented 3 years ago

@engrodawood No solution as of yet.

EllaBoytim commented 3 years ago

Hi, I am reaching the same roadblock. Has anyone been able to figure out where/how to get the _Coords.tsv file, or figured out a way to work around it yet? Thanks!

suke18 commented 3 years ago

I reached the same roadblock @bryanhe

lancezhangsf commented 3 years ago

Did anyone find the data?I have the same problem

moutsu92 commented 3 months ago

@suke18 @engrodawood @lancezhangsf @chenyang1999 @Vidushi-0617 Hi, I'm facing this error could you please tell me how did you do the right way to replcate the code correctly

FileNotFoundError: [Errno 2] No such file or directory: '/ST-Net/data/BC24105/BC24105_D1.pkl'