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btmartin721 / ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
GNU General Public License v3.0
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Hybrid Index #18

Closed glaudelrio closed 2 years ago

glaudelrio commented 2 years ago

Hi! I would like to know whether there is a way to provide the hybrid index (admixture coefficient), calculated in previous analysis, in ClineHelpR like in HIEST: https://cran.r-project.org/web/packages/HIest/HIest.pdf

The idea is to avoid classifying individuals in discrete populations, but rather use a continuous measure of admixture coefficient.

Thank you so much!

btmartin721 commented 2 years ago

Hello. BGC estimates the hybrid index, but currently there is not a way to provide it as input into the analysis. Were you wanting to provide it as input to the Phi plots? If so, those use the estimated hybrid index to plot the genomic clines on the X-axis.