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btmartin721 / ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
GNU General Public License v3.0
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ClineHelpR R package conda install? #27

Closed AllysonDekovich closed 1 year ago

AllysonDekovich commented 1 year ago

Hi!

I'm in the process of creating my bgc input files. The genind2bgc function is taking a long time to run in RStudio, so I thought I would run the R script on our remote servers to free up my laptop.

I'm running the Rscript through the ClineHelpR conda environment, and I'm getting an error that the "genind2bgc" command is not recognized: Error in genind2bgc(gen = hybrid_0.8gmiss_0.3imiss_minDP5_srich_sp_remove, : could not find function "genind2bgc"

It looks like the genind2bgc is not included in any of the dependencies that were required for the ClineHelpR conda environment. Is there an R package conda install of ClineHelpR that I can install within the ClineHelpR environment?

Thanks!

AllysonDekovich commented 1 year ago

Never mind, I figured it out!