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btmartin721 / ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
GNU General Public License v3.0
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How to get the outliers position #33

Open lidanqi1990 opened 2 months ago

lidanqi1990 commented 2 months ago

Hi btmartin, I have already run BGC and plot BGC results, see below. How can I get the outlier SNP position in each chromosome? image

All the best, Danqi Li

lidanqi1990 commented 2 months ago

like this image

lidanqi1990 commented 1 week ago

Hi again, In the file of get_bgc_outliers, there were two column named "alpha/beta.excess" and "alpha/beta.outlier", what's the difference between these two values?

All the best!