I'm trying to create the Volcano and MA plots for a dataset I've been working on. However, it seems that the figure legends consistently show a difference between the number of DEGs generated by DESeq2 and vsVolcano/MA functions.
Is there a way to disable the predictions from vidger and just work with the DESeq2 object or coerced dataframe?
Hi!
Hope you're doing well!
I'm trying to create the Volcano and MA plots for a dataset I've been working on. However, it seems that the figure legends consistently show a difference between the number of DEGs generated by DESeq2 and vsVolcano/MA functions.
Is there a way to disable the predictions from vidger and just work with the DESeq2 object or coerced dataframe?