Error in filter(., dist == min(dist)) : ... use stats::filter and dplyr::filter instead

[perezja]

Appears there is a conflict in the use of filter (i.e., dplyr::filter) in some FigR functions with other libraries in user-space.

At the end of FigR::cellPairing the error is thrown

Error in filter(., dist == min(dist)) : 
  ensembldb::filter requires an 'EnsDb' object as input. To call the filter function from the stats or dplyr package use stats::filter and dplyr::filter instead.
Calls: <Anonymous> -> %>% -> filter
Execution halted

I had the following libraries loaded:

• EnsDb.Hsapiens.v86, BSgenome.Hsapiens.UCSC.hg38, Seurat, Signac, FigR, dplyr, glue, logger

Perhaps should include the library prefix for common generics across all FigR functions.

[vkartha]

Hi there, I've added the dplyr:: specification for this, and throughout the other functions. Hopefully this should be fixed now, regardless of your libraries loaded.

[vkartha]

@perezja Closing this for now, hope it solved the issue for you, let me know if it persisted