How to obtain the file "w_hm3.snplist.bz2"

[keypanqi]

Hi~ Can I get the file "w_hm3.snplist.bz2" from the website(https://alkesgroup.broadinstitute.org/LDSCORE/) ? I couldn't find it on this website. Maybe, somebody can send me one. Or there is another website? Here is my email: 1053095150@qq.com！ Thanks a lot！！！

[DavisCammann]

The SNP list (And European LD Scores) that were available originally on the LDSC wiki can be found here: https://ibg.colorado.edu/cdrom2021/Day06-nivard/GenomicSEM_practical/eur_w_ld_chr/

There are also 3 official locations where the most up-to-date LDSC materials are stored https://console.cloud.google.com/storage/browser/broad-alkesgroup-public-requester-pays (Need to pay for large downloads) https://doi.org/10.5281/zenodo.7768714 https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/baselineLF_v2.2.UKB.tar.gz

[carolinamf]

Hi,

even using the above mentioned websites I could not find the file: eur_w_ld_chr.tar.bz2

I don't know if possible share this file with me.

Thank for your attention.

[jfores]

Hi Carolina! The first link provided by DavisCannaman is the uncompressed folder you are looking for. eur_w_ld_chr.tar.bz2 is not a file but a folder containing multiple files including the information of the LD scores for each SNP by chromosome. In addition, you will also find the w_hm3.snplist file which is also necessary to run the genetic correlation analyses if I remember correctly!

Cheers!

J

[carolinamf]

Thank you for your response.

Carolina M

Em seg., 4 de set. de 2023 às 02:15, jfores @.***> escreveu:

Hi Carolina! The first link provided by DavisCannaman is the uncompressed folder you are looking for. eur_w_ld_chr.tar.bz2 is not a file but a folder containing multiple files including the information of the LD scores for each SNP by chromosome. In addition, you will also find the w_hm3.snplist file which is also necessary to run the genetic correlation analyses if I remember correctly!

Cheers!

J

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[AEAEAESSC]

https://github.com/perslab/CELLECT/blob/master/data/ldsc/w_hm3.snplist

[carolinamf]

Thank you for your support.

Em sex., 5 de jan. de 2024 05:17, AEAEAESSC @.***> escreveu:

https://github.com/perslab/CELLECT/blob/master/data/ldsc/w_hm3.snplist

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[April-txt]

Thank for your support