I am trying to calculate heritability and getting this error:
Reading regression weight LD Score from baselineLD_v2.3/baselineLD.[1-22] ... (ldscore_fromlist)
Traceback (most recent call last):
File "/hpf/tools/centos7/ldsc/1.0.1/ldsc.py", line 644, in
sumstats.estimate_h2(args, log)
File "/hpf/tools/centos7/ldsc/1.0.1/ldscore/sumstats.py", line 326, in estimate_h2
args, log, args.h2)
File "/hpf/tools/centos7/ldsc/1.0.1/ldscore/sumstats.py", line 247, in _read_ld_sumstats
w_ld = _read_w_ld(args, log)
File "/hpf/tools/centos7/ldsc/1.0.1/ldscore/sumstats.py", line 136, in _read_w_ld
raise ValueError('--w-ld may only have one LD Score column.')
ValueError: --w-ld may only have one LD Score column.
I am trying to calculate heritability and getting this error:
Reading regression weight LD Score from baselineLD_v2.3/baselineLD.[1-22] ... (ldscore_fromlist) Traceback (most recent call last): File "/hpf/tools/centos7/ldsc/1.0.1/ldsc.py", line 644, in
sumstats.estimate_h2(args, log)
File "/hpf/tools/centos7/ldsc/1.0.1/ldscore/sumstats.py", line 326, in estimate_h2
args, log, args.h2)
File "/hpf/tools/centos7/ldsc/1.0.1/ldscore/sumstats.py", line 247, in _read_ld_sumstats
w_ld = _read_w_ld(args, log)
File "/hpf/tools/centos7/ldsc/1.0.1/ldscore/sumstats.py", line 136, in _read_w_ld
raise ValueError('--w-ld may only have one LD Score column.')
ValueError: --w-ld may only have one LD Score column.
I am wondering what causing the problem.