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bunnech / cellot

Learning Single-Cell Perturbation Responses using Neural Optimal Transport
BSD 3-Clause "New" or "Revised" License
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AssertionError #11

Closed jiyuanj closed 7 months ago

jiyuanj commented 7 months ago

In training data phase. Ran python ./scripts/train.py --outdir ./results/4i/drug-cisplatin/model-cellot --config ./configs/tasks/4i.yaml --config ./configs/models/cellot.yaml --config.data.target cisplatin and it terminated with AssertionError.

Screenshot 2024-01-19 at 3 36 58 PM
stefangstark commented 7 months ago

Please ensure that you have downloaded the data and it is in the correct location. All paths are relative to the git repo. So for instance, this error is thrown because it cannot find ./datasets/4i/features.txt