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bunnech / cellot

Learning Single-Cell Perturbation Responses using Neural Optimal Transport
BSD 3-Clause "New" or "Revised" License
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How to set the parameter target if i want to predict the outcome of multiple drugs? #26

Closed weizhiting closed 3 months ago

weizhiting commented 3 months ago

Hi, In the sciplex dataset ood mode, if i want to predict the outcome of multiple drugs, how to set the parameter target in the config file? (1) target: drug A, drug B ,... , drug N. For example, if i want to predict the outcome of 3 drugs, respectively, target: drug A, drug B, drug C? (2) or for every drug i want to predict, i should train a new model?

Best, Hope to receive your reply.

stefangstark commented 3 months ago

Yes, every drug is its own model. You can either specify N configs or see here for an example of how to set config params from the command line.