search

bunnech / cellot

Learning Single-Cell Perturbation Responses using Neural Optimal Transport
BSD 3-Clause "New" or "Revised" License
109 stars 9 forks source link

4i dataset missing #32

Open TedSIWEILIU opened 2 months ago

TedSIWEILIU commented 2 months ago

Hi, thanks for the great work!

When I tried to reproduce some results, I found that the /datasets/4i/ directory is unavailable. In fact, I follow your guidelines step by step. First I download the dataset from this link: https://polybox.ethz.ch/index.php/s/RAykIMfDl0qCJaM. Then I unzip the file and put everything under the ./datasets/ directory, which finally looks like this picture below: WechatIMG394

I have checked all the information including those closed GitHub issues. I believe that this 4i dataset should be downloaded from somewhere instead of something that will be produced through some pre-processing.

Please guide me through this problem. I appreciate any help you can provide. Best wishes

stefangstark commented 2 months ago

oh hmm it looks like that file was renamed during the revision.

./datasets_revision/cl-8h/4i-melanoma_cell_lines-8h.h5ad should be named ./datasets/4i/8h.h5ad

Let me see about getting this fixed, but that should get you running for now