Any example for o.o.s? - Githubissues

bunnech / cellot

Learning Single-Cell Perturbation Responses using Neural Optimal Transport

BSD 3-Clause "New" or "Revised" License

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Any example for o.o.s? #5

Closed huboqiang closed 10 months ago

huboqiang commented 10 months ago

Hi, as mentioned in README.md

All scripts to reproduce the experiments in the i.i.d. (independent-and-identically-distributed), o.o.s. (out-of-sample), and o.o.d. (out-of-distribution) setting can be found in scripts/submit

I tried to find ./configs/tasks/oos-lupuspatients.yaml in scripts/submit/oos-lupuspatients.sh, but only found lupuspatients.yaml and lupuspatients-ood.yaml.

So is there any example for o.o.s?

Thanks.

stefangstark commented 10 months ago

Hi, You can use those configs. So actually the model treats the oos and ood tasks the same way. We made the distinction because of how the lupus patients data was collected, i.e. processed it was as a single batch.