victormandela commented 3 years ago

Hello, I am unable install both timetk and tidyquant packages on ubuntu OS. I have tried the usuall install.packages("timetk") and remotes::install.. as adviced on github but it doesn't install! It gives me the following error Installing package into ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1’ (as ‘lib’ is unspecified) also installing the dependencies ‘quadprog’, ‘fracdiff’, ‘lmtest’, ‘tseries’, ‘urca’, ‘RcppArmadillo’, ‘forecast’

x-gzip' length 36141 bytes (35 KB)

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trying URL 'https://cloud.r-project.org/src/contrib/fracdiff_1.5-1.tar.gz' Content type 'application/x-gzip' length 63764 bytes (62 KB)

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trying URL 'https://cloud.r-project.org/src/contrib/lmtest_0.9-38.tar.gz' Content type 'application/x-gzip' length 227052 bytes (221 KB)

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trying URL 'https://cloud.r-project.org/src/contrib/tseries_0.10-48.tar.gz' Content type 'application/x-gzip' length 170342 bytes (166 KB)

downloaded 166 KB

trying URL 'https://cloud.r-project.org/src/contrib/urca_1.3-0.tar.gz' Content type 'application/x-gzip' length 682935 bytes (666 KB)

downloaded 666 KB

trying URL 'https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.6.0.0.tar.gz' Content type 'application/x-gzip' length 1673880 bytes (1.6 MB)

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trying URL 'https://cloud.r-project.org/src/contrib/forecast_8.15.tar.gz' Content type 'application/x-gzip' length 584703 bytes (570 KB)

downloaded 570 KB

trying URL 'https://cloud.r-project.org/src/contrib/timetk_2.6.1.tar.gz' Content type 'application/x-gzip' length 3793775 bytes (3.6 MB)

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installing source package ‘quadprog’ ... package ‘quadprog’ successfully unpacked and MD5 sums checked using staged installation ** libs gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -msse2 -mfpmath=sse -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -c aind.f -o aind.o /bin/bash: gfortran: command not found make: *** [/usr/lib/R/etc/Makeconf:191: aind.o] Error 127 ERROR: compilation failed for package ‘quadprog’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/quadprog’ Warning in install.packages : installation of package ‘quadprog’ had non-zero exit status
installing source package ‘fracdiff’ ... package ‘fracdiff’ successfully unpacked and MD5 sums checked using staged installation ** libs gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fdcore.c -o fdcore.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fdgam.c -o fdgam.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fdhess.c -o fdhess.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fdmin.c -o fdmin.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fdsim.c -o fdsim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmult.c -o pmult.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fracdiff.so fdcore.o fdgam.o fdhess.o fdmin.o fdsim.o init.o pmult.o -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status make: *** [/usr/share/R/share/make/shlib.mk:10: fracdiff.so] Error 1 ERROR: compilation failed for package ‘fracdiff’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/fracdiff’ Warning in install.packages : installation of package ‘fracdiff’ had non-zero exit status
installing source package ‘lmtest’ ... package ‘lmtest’ successfully unpacked and MD5 sums checked using staged installation ** libs gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -c pan.f -o pan.o /bin/bash: gfortran: command not found make: *** [/usr/lib/R/etc/Makeconf:191: pan.o] Error 127 ERROR: compilation failed for package ‘lmtest’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/lmtest’ Warning in install.packages : installation of package ‘lmtest’ had non-zero exit status
installing source package ‘urca’ ... package ‘urca’ successfully unpacked and MD5 sums checked using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -c UnitRootMacKinnon.f -o UnitRootMacKinnon.o /bin/bash: gfortran: command not found make: *** [/usr/lib/R/etc/Makeconf:191: UnitRootMacKinnon.o] Error 127 ERROR: compilation failed for package ‘urca’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/urca’ Warning in install.packages : installation of package ‘urca’ had non-zero exit status
installing source package ‘RcppArmadillo’ ... package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++14 accepts -g... yes checking how to run the C++ preprocessor... g++ -std=gnu++14 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ -std=gnu++14 accepts -g... (cached) yes checking whether we have a suitable tempdir... /tmp checking whether R CMD SHLIB can already compile programs using OpenMP... yes checking LAPACK_LIBS... system LAPACK found configure: creating ./config.status config.status: creating inst/include/RcppArmadilloConfigGenerated.h config.status: creating src/Makevars ** libs g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppArmadillo.cpp -o RcppArmadillo.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fastLm.cpp -o fastLm.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -llapack /usr/bin/ld: cannot find -lblas /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status make: *** [/usr/share/R/share/make/shlib.mk:10: RcppArmadillo.so] Error 1 ERROR: compilation failed for package ‘RcppArmadillo’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/RcppArmadillo’ Warning in install.packages : installation of package ‘RcppArmadillo’ had non-zero exit status ERROR: dependency ‘quadprog’ is not available for package ‘tseries’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/tseries’ Warning in install.packages : installation of package ‘tseries’ had non-zero exit status ERROR: dependencies ‘fracdiff’, ‘lmtest’, ‘tseries’, ‘urca’, ‘RcppArmadillo’ are not available for package ‘forecast’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/forecast’ Warning in install.packages : installation of package ‘forecast’ had non-zero exit status ERROR: dependency ‘forecast’ is not available for package ‘timetk’
removing ‘/home/victor/R/x86_64-pc-linux-gnu-library/4.1/timetk’ Warning in install.packages : installation of package ‘timetk’ had non-zero exit status

The downloaded source packages are in ‘/tmp/RtmpEIOXH5/downloaded_packages’

mdancho84 commented 2 years ago

We test on ubuntu so this looks like an issue isolated to your setup. I see that several dependencies that timetk depends on are not being installed. You might try installing from CRAN install.packages("timetk") rather than remotes.

victormandela commented 2 years ago

I managed to

On Sat, Nov 13, 2021, 14:51 Matt Dancho @.***> wrote:

Closed #91 https://github.com/business-science/timetk/issues/91.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/business-science/timetk/issues/91#event-5613062165, or unsubscribe https://github.com/notifications/unsubscribe-auth/AVHVKQTS76IUCMIJ4GQARYTULZGMRANCNFSM5EVICRNQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

victormandela commented 2 years ago

i managed to install on a standard installation. sorry for late response, Matt.

On Sat, Nov 13, 2021, 23:04 Mandela @.***> wrote:

I managed to

On Sat, Nov 13, 2021, 14:51 Matt Dancho @.***> wrote:

Closed #91 https://github.com/business-science/timetk/issues/91.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/business-science/timetk/issues/91#event-5613062165, or unsubscribe https://github.com/notifications/unsubscribe-auth/AVHVKQTS76IUCMIJ4GQARYTULZGMRANCNFSM5EVICRNQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.