search

buzsakilab / buzcode

Code for internal lab sharing - polishing has started but is by no means complete
http://www.buzsakilab.com/
GNU General Public License v3.0
119 stars 128 forks source link

Compile issue #238

Closed englishdaniel closed 4 years ago

englishdaniel commented 6 years ago

Running Matlab R2017A, (also tried R2018b) Xcode Version 9.4.1 (9F2000) MacOs High Sierra Version 10.13.6 (17G65)

Trying to compile, running compileBuzode.m from here: /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master

end up with this:

Warning: CHRONUX DIDN'T COMPILE. sad.

In compileBuzcode (line 23)

Any ideas?

Complete result here:

compileBuzcode Building with 'Xcode with Clang'. MEX completed successfully. Building with 'Xcode with Clang'. /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/FMAToolbox/Analyses/private/FindField.c:30:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] else return; ^ /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/FMAToolbox/Analyses/private/FindField.c:33:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] else return; ^ /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/FMAToolbox/Analyses/private/FindField.c:36:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] else return; ^ /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/FMAToolbox/Analyses/private/FindField.c:39:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] else return; ^ 4 warnings generated.

MEX completed successfully. Building with 'Xcode with Clang'. MEX completed successfully. Building with 'Xcode with Clang'. MEX completed successfully. Building with 'Xcode with Clang'. MEX completed successfully. Building with 'Xcode with Clang'. MEX completed successfully. Verbose mode is on. ... Looking for compiler 'Xcode with Clang' ... ... Looking for environment variable 'DEVELOPER_DIR' ...No. ... Executing command 'xcode-select -print-path' ...Yes ('/Applications/Xcode.app/Contents/Developer'). ... Looking for folder '/Applications/Xcode.app/Contents/Developer' ...Yes. ... Executing command 'which xcrun' ...Yes ('/usr/bin/xcrun'). ... Looking for folder '/usr/bin' ...Yes. ... Executing command 'defaults read com.apple.dt.Xcode IDEXcodeVersionForAgreedToGMLicense' ...No. ... Executing command 'defaults read /Library/Preferences/com.apple.dt.Xcode IDEXcodeVersionForAgreedToGMLicense' ...Yes ('9.4.1'). ... Executing command ' agreed=9.4.1 if echo $agreed | grep -E '[.\"]' >/dev/null; then lhs=expr "$agreed" : '\([0-9]*\)[\.].*' rhs=expr "$agreed" : '[0-9]*[\.]\(.*\)$' if echo $rhs | grep -E '[."]' >/dev/null; then rhs=expr "$rhs" : '\([0-9]*\)[\.].*' fi if [ $lhs -gt 4 ] || ( [ $lhs -eq 4 ] && [ $rhs -ge 3 ] ); then echo $agreed else exit 1 fi fi' ...Yes ('9.4.1'). ... Executing command 'xcrun -sdk macosx --show-sdk-path' ...Yes ('/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk'). ... Executing command 'xcrun -sdk macosx --show-sdk-version' ...Yes ('10.13'). Found installed compiler 'Xcode with Clang'. Options file details

Compiler location: /Applications/Xcode.app/Contents/Developer
Options file: /Applications/MATLAB_R2017a.app/bin/maci64/mexopts/clang_maci64.xml
CMDLINE200 : /usr/bin/xcrun -sdk macosx10.13 clang -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle  -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblfev.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblocf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libmut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libtube.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mlfut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/c_mexapi_version.o  -O -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map"  -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ -o mexlf.mexmaci64
CC : /usr/bin/xcrun -sdk macosx10.13 clang
CXX : /usr/bin/xcrun -sdk macosx10.13 clang++
DEFINES : -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE
MATLABMEX : -DMATLAB_MEX_FILE
MACOSX_DEPLOYMENT_TARGET : 10.9
CFLAGS : -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk
INCLUDE : -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include"
COPTIMFLAGS : -O2 -fwrapv -DNDEBUG
CDEBUGFLAGS : -g
LD : /usr/bin/xcrun -sdk macosx10.13 clang
LDXX : /usr/bin/xcrun -sdk macosx10.13 clang++
LDFLAGS : -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle  -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map"
LDBUNDLE : -bundle 
FUNCTIONMAP : "/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map"
VERSIONMAP : "/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map"
LINKEXPORT : -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map"
LINKEXPORTVER : -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map"
LINKLIBS : -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++
LDOPTIMFLAGS : -O
LDDEBUGFLAGS : -g
OBJEXT : .o
LDEXT : .mexmaci64
SETENV : CC="/usr/bin/xcrun -sdk macosx10.13 clang"
            CXX="/usr/bin/xcrun -sdk macosx10.13 clang++"
            CFLAGS="-fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE"
            CXXFLAGS="-fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -fobjc-arc -std=c++11 -stdlib=libc++ -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE"
            COPTIMFLAGS="-O2 -fwrapv -DNDEBUG"
            CXXOPTIMFLAGS="-O2 -fwrapv -DNDEBUG"
            CDEBUGFLAGS="-g"
            CXXDEBUGFLAGS="-g"
            LD="/usr/bin/xcrun -sdk macosx10.13 clang"
            LDXX="/usr/bin/xcrun -sdk macosx10.13 clang++"
            LDFLAGS="-Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle  -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map""
            LDDEBUGFLAGS="-g"
DEVELOPER_DIR_CHECK : 
XCODE_DIR : /Applications/Xcode.app/Contents/Developer
XCRUN_DIR : /usr/bin
XCODE_AGREED_VERSION : 9.4.1
ISYSROOT : /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk
SDKVER : 10.13
MATLABROOT : /Applications/MATLAB_R2017a.app
ARCH : maci64
SRC : "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblfev.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblocf.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libmut.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libtube.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mlfut.c";/Applications/MATLAB_R2017a.app/extern/version/c_mexapi_version.c
OBJ : /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblfev.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblocf.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libmut.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libtube.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mlfut.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/c_mexapi_version.o
OBJS : /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblfev.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblocf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libmut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libtube.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mlfut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/c_mexapi_version.o 
SRCROOT : /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf
DEF : /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.def
EXP : mexlf.exp
LIB : mexlf.lib
EXE : mexlf.mexmaci64
ILK : mexlf.ilk
MANIFEST : mexlf.mexmaci64.manifest
TEMPNAME : mexlf
EXEDIR : 
EXENAME : mexlf
OPTIM : -O2 -fwrapv -DNDEBUG
LINKOPTIM : -O
CMDLINE100_0 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.o
CMDLINE100_1 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblfev.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblfev.o
CMDLINE100_2 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblocf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblocf.o
CMDLINE100_3 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libmut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libmut.o
CMDLINE100_4 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libtube.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libtube.o
CMDLINE100_5 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mlfut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mlfut.o
CMDLINE100_6 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG /Applications/MATLAB_R2017a.app/extern/version/c_mexapi_version.c -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/c_mexapi_version.o

Building with 'Xcode with Clang'. /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.o /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c:6:1: warning: '/' within block comment [-Wcomment] / $Revision: 1.5 $ */ ^ 1 warning generated.

/usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblfev.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblfev.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblocf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblocf.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libmut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libmut.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libtube.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libtube.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mlfut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mlfut.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG /Applications/MATLAB_R2017a.app/extern/version/c_mexapi_version.c -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/c_mexapi_version.o /usr/bin/xcrun -sdk macosx10.13 clang -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblfev.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/liblocf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libmut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/libtube.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/mlfut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_5150550300368_79465/c_mexapi_version.o -O -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map" -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ -o mexlf.mexmaci64 Warning: CHRONUX DIDN'T COMPILE. sad.

In compileBuzcode (line 23) Error using cd Cannot CD to externalPackages/xmltree-2.0/@xmltree/private/ (Name is nonexistent or not a directory).

Error in compileBuzcode (line 26) cd('externalPackages/xmltree-2.0/@xmltree/private/')

brendonw1 commented 6 years ago

Am I correct in reading that the key nugget is the following?: Warning: CHRONUX DIDN'T COMPILE. sad.

In compileBuzcode (line 23) Error using cd Cannot CD to externalPackages/xmltree-2.0/@xmltree/private/ (Name is nonexistent or not a directory).

Error in compileBuzcode (line 26) cd('externalPackages/xmltree-2.0/@xmltree/private/')

brendonw1 commented 6 years ago

If so I'm trying to remember but we used to have some kind of xmltree issues right?

englishdaniel commented 6 years ago

I think that is also an issue, but it is still not compiling CHRONUX even before it gets there, but doest actually throw a specific error?

On Wed, Sep 5, 2018 at 12:31 PM Brendon Watson notifications@github.com wrote:

If so I'm trying to remember but we used to have some kind of xmltree issues right?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418795693, or mute the thread https://github.com/notifications/unsubscribe-auth/AfcEcZyrOnVIVTO2j9dfYZXwDi11GtREks5uX_xkgaJpZM4WbNxZ .

-- Daniel F. English, Ph.D. Assistant Professor Virginia Tech - School of Neuroscience Email: neurodan83@vt.edu Website: www.englishneurolab.com http://www.danenglishneuro.com

englishdaniel commented 6 years ago

I went directly to

/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source

and tried to compile, with this result, and a more specific error, error at the end of course:

compile Verbose mode is on. ... Looking for compiler 'Xcode with Clang' ... ... Looking for environment variable 'DEVELOPER_DIR' ...No. ... Executing command 'xcode-select -print-path' ...Yes ('/Applications/Xcode.app/Contents/Developer'). ... Looking for folder '/Applications/Xcode.app/Contents/Developer' ...Yes. ... Executing command 'which xcrun' ...Yes ('/usr/bin/xcrun'). ... Looking for folder '/usr/bin' ...Yes. ... Executing command 'defaults read com.apple.dt.Xcode IDEXcodeVersionForAgreedToGMLicense' ...No. ... Executing command 'defaults read /Library/Preferences/com.apple.dt.Xcode IDEXcodeVersionForAgreedToGMLicense' ...Yes ('9.4.1'). ... Executing command ' agreed=9.4.1 if echo $agreed | grep -E '[.\"]' >/dev/null; then lhs=expr "$agreed" : '\([0-9]*\)[\.].*' rhs=expr "$agreed" : '[0-9]*[\.]\(.*\)$' if echo $rhs | grep -E '[."]' >/dev/null; then rhs=expr "$rhs" : '\([0-9]*\)[\.].*' fi if [ $lhs -gt 4 ] || ( [ $lhs -eq 4 ] && [ $rhs -ge 3 ] ); then echo $agreed else exit 1 fi fi' ...Yes ('9.4.1'). ... Executing command 'xcrun -sdk macosx --show-sdk-path' ...Yes ('/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk'). ... Executing command 'xcrun -sdk macosx --show-sdk-version' ...Yes ('10.13'). Found installed compiler 'Xcode with Clang'. Options file details

Compiler location: /Applications/Xcode.app/Contents/Developer Options file: /Applications/MATLAB_R2017a.app/bin/maci64/mexopts/clang_maci64.xml CMDLINE200 : /usr/bin/xcrun -sdk macosx10.13 clang -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblfev.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libmut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libtube.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mlfut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/c_mexapi_version.o -O -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map" -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ -o mexlf.mexmaci64 CC : /usr/bin/xcrun -sdk macosx10.13 clang CXX : /usr/bin/xcrun -sdk macosx10.13 clang++ DEFINES : -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE MATLABMEX : -DMATLAB_MEX_FILE MACOSX_DEPLOYMENT_TARGET : 10.9 CFLAGS : -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk INCLUDE : -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" COPTIMFLAGS : -O2 -fwrapv -DNDEBUG CDEBUGFLAGS : -g LD : /usr/bin/xcrun -sdk macosx10.13 clang LDXX : /usr/bin/xcrun -sdk macosx10.13 clang++ LDFLAGS : -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" LDBUNDLE : -bundle FUNCTIONMAP : "/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" VERSIONMAP : "/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map" LINKEXPORT : -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" LINKEXPORTVER : -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map" LINKLIBS : -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ LDOPTIMFLAGS : -O LDDEBUGFLAGS : -g OBJEXT : .o LDEXT : .mexmaci64 SETENV : CC="/usr/bin/xcrun -sdk macosx10.13 clang" CXX="/usr/bin/xcrun -sdk macosx10.13 clang++" CFLAGS="-fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE" CXXFLAGS="-fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -fobjc-arc -std=c++11 -stdlib=libc++ -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE" COPTIMFLAGS="-O2 -fwrapv -DNDEBUG" CXXOPTIMFLAGS="-O2 -fwrapv -DNDEBUG" CDEBUGFLAGS="-g" CXXDEBUGFLAGS="-g" LD="/usr/bin/xcrun -sdk macosx10.13 clang" LDXX="/usr/bin/xcrun -sdk macosx10.13 clang++" LDFLAGS="-Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map"" LDDEBUGFLAGS="-g" DEVELOPER_DIR_CHECK : XCODE_DIR : /Applications/Xcode.app/Contents/Developer XCRUN_DIR : /usr/bin XCODE_AGREED_VERSION : 9.4.1 ISYSROOT : /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk SDKVER : 10.13 MATLABROOT : /Applications/MATLAB_R2017a.app ARCH : maci64 SRC : "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblfev.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblocf.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libmut.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libtube.c";"/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mlfut.c";/Applications/MATLAB_R2017a.app/extern/version/c_mexapi_version.c OBJ : /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblfev.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libmut.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libtube.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mlfut.o;/var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/c_mexapi_version.o OBJS : /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblfev.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libmut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libtube.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mlfut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/c_mexapi_version.o SRCROOT : /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf DEF : /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.def EXP : mexlf.exp LIB : mexlf.lib EXE : mexlf.mexmaci64 ILK : mexlf.ilk MANIFEST : mexlf.mexmaci64.manifest TEMPNAME : mexlf EXEDIR : EXENAME : mexlf OPTIM : -O2 -fwrapv -DNDEBUG LINKOPTIM : -O CMDLINE100_0 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o CMDLINE100_1 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblfev.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblfev.o CMDLINE100_2 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblocf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o CMDLINE100_3 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libmut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libmut.o CMDLINE100_4 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libtube.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libtube.o CMDLINE100_5 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mlfut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mlfut.o CMDLINE100_6 : /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG /Applications/MATLAB_R2017a.app/extern/version/c_mexapi_version.c -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/c_mexapi_version.o

Building with 'Xcode with Clang'. /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o /Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mexlf.c:6:1: warning: '/' within block comment [-Wcomment] / $Revision: 1.5 $ */ ^ 1 warning generated.

/usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblfev.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblfev.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/liblocf.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libmut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libmut.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/libtube.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libtube.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG "/Users/Dan/Dropbox/English Lab MATLAB/buzcode/buzcode-master/externalPackages/chronux_2_12/locfit/Source/mlfut.c" -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mlfut.o /usr/bin/xcrun -sdk macosx10.13 clang -c -DTARGET_API_VERSION=700 -DUSE_MEX_CMD -DMATLAB_MEX_FILE -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.9 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -O2 -fwrapv -DNDEBUG /Applications/MATLAB_R2017a.app/extern/version/c_mexapi_version.c -o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/c_mexapi_version.o /usr/bin/xcrun -sdk macosx10.13 clang -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.9 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -bundle -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblfev.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libmut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/libtube.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mlfut.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/c_mexapi_version.o -O -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/c_exportsmexfileversion.map" -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -lc++ -o mexlf.mexmaci64 Error using mex duplicate symbol _lf_error in: /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/mexlf.o /var/folders/qk/kt67r1rj665gkk5vw5_wqmpm0000gp/T/mex_3809541020091_82745/liblocf.o ld: 1 duplicate symbol for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation)

Error in compile (line 5) mex -v mexlf.c liblfev.c liblocf.c libmut.c libtube.c mlfut.c

evilrobotxoxo commented 6 years ago

It's hard to even see where the error is, but one very simple thing I would suggest is to replace the spaces in your directory name with underscores.

Luke

Lucas L. Sjulson, MD, PhD Assistant Professor Department of Psychiatry and Behavioral Sciences Dominick P. Purpura Department of Neuroscience Albert Einstein College of Medicine Rose F. Kennedy Center, Room 227 1410 Pelham Parkway South, Bronx, NY 10461 cell: 646-528-9672 http://sjulsonlab.org

On Wed, Sep 5, 2018 at 1:29 PM englishdaniel notifications@github.com wrote:

I think that is also an issue, but it is still not compiling CHRONUX even before it gets there, but doest actually throw a specific error?

On Wed, Sep 5, 2018 at 12:31 PM Brendon Watson notifications@github.com wrote:

If so I'm trying to remember but we used to have some kind of xmltree issues right?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418795693 , or mute the thread < https://github.com/notifications/unsubscribe-auth/AfcEcZyrOnVIVTO2j9dfYZXwDi11GtREks5uX_xkgaJpZM4WbNxZ

.

-- Daniel F. English, Ph.D. Assistant Professor Virginia Tech - School of Neuroscience Email: neurodan83@vt.edu Website: www.englishneurolab.com http://www.danenglishneuro.com

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418814089, or mute the thread https://github.com/notifications/unsubscribe-auth/AE3LJZ-oohBq_iqeDnAgnJqgsOVJ4TC2ks5uYAn6gaJpZM4WbNxZ .

dlevenstein commented 6 years ago

I think I’ve had errors compiling chronux with new OS/matlab in the past - which is why we put in the try/catch loop. Fortunately very little if anything in buzcode requires chronux.

On Sep 5, 2018, at 1:37 PM, Luke Sjulson notifications@github.com wrote:

It's hard to even see where the error is, but one very simple thing I would suggest is to replace the spaces in your directory name with underscores.

Luke

Lucas L. Sjulson, MD, PhD Assistant Professor Department of Psychiatry and Behavioral Sciences Dominick P. Purpura Department of Neuroscience Albert Einstein College of Medicine Rose F. Kennedy Center, Room 227 1410 Pelham Parkway South, Bronx, NY 10461 cell: 646-528-9672 http://sjulsonlab.org

On Wed, Sep 5, 2018 at 1:29 PM englishdaniel notifications@github.com wrote:

I think that is also an issue, but it is still not compiling CHRONUX even before it gets there, but doest actually throw a specific error?

On Wed, Sep 5, 2018 at 12:31 PM Brendon Watson notifications@github.com wrote:

If so I'm trying to remember but we used to have some kind of xmltree issues right?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418795693 , or mute the thread < https://github.com/notifications/unsubscribe-auth/AfcEcZyrOnVIVTO2j9dfYZXwDi11GtREks5uX_xkgaJpZM4WbNxZ

.

-- Daniel F. English, Ph.D. Assistant Professor Virginia Tech - School of Neuroscience Email: neurodan83@vt.edu Website: www.englishneurolab.com http://www.danenglishneuro.com

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418814089, or mute the thread https://github.com/notifications/unsubscribe-auth/AE3LJZ-oohBq_iqeDnAgnJqgsOVJ4TC2ks5uYAn6gaJpZM4WbNxZ .

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418816525, or mute the thread https://github.com/notifications/unsubscribe-auth/AG7dmCZcbcho9UYEvt7jTzVkO5KEz4wfks5uYAu_gaJpZM4WbNxZ.

englishdaniel commented 6 years ago

to fix the error of not running the stuff in xmltree, I changed:

cd('externalPackages/xmltree-2.0/@xmltree/private/') mex -O xml_findstr.c cd('../../../..')

to

cd('../../../..') cd('externalPackages/xmltree-2.0/@xmltree/private/') mex -O xml_findstr.c cd('../../../..')

now it goes to the right directory and runs fine. CHRONUX still won't compile, but I guess its OK for most of buzcode to not have it?

dlevenstein commented 6 years ago

OH! I think the file separator issue was fixed by @DavidTingley in the dev branch.

See the issue here: https://github.com/buzsakilab/buzcode/issues/223

brendonw1 commented 6 years ago

Well, maybe we should do a depfun or something to check for chronux??

On Wed, Sep 5, 2018 at 1:38 PM Dan Levenstein notifications@github.com wrote:

I think I’ve had errors compiling chronux with new OS/matlab in the past - which is why we put in the try/catch loop. Fortunately very little if anything in buzcode requires chronux.

On Sep 5, 2018, at 1:37 PM, Luke Sjulson notifications@github.com wrote:

It's hard to even see where the error is, but one very simple thing I would suggest is to replace the spaces in your directory name with underscores.

Luke

Lucas L. Sjulson, MD, PhD Assistant Professor Department of Psychiatry and Behavioral Sciences Dominick P. Purpura Department of Neuroscience Albert Einstein College of Medicine Rose F. Kennedy Center, Room 227 1410 Pelham Parkway South, Bronx, NY 10461 cell: 646-528-9672 http://sjulsonlab.org

On Wed, Sep 5, 2018 at 1:29 PM englishdaniel notifications@github.com wrote:

I think that is also an issue, but it is still not compiling CHRONUX even before it gets there, but doest actually throw a specific error?

On Wed, Sep 5, 2018 at 12:31 PM Brendon Watson < notifications@github.com> wrote:

If so I'm trying to remember but we used to have some kind of xmltree issues right?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub < https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418795693 , or mute the thread <

https://github.com/notifications/unsubscribe-auth/AfcEcZyrOnVIVTO2j9dfYZXwDi11GtREks5uX_xkgaJpZM4WbNxZ

.

-- Daniel F. English, Ph.D. Assistant Professor Virginia Tech - School of Neuroscience Email: neurodan83@vt.edu Website: www.englishneurolab.com http://www.danenglishneuro.com

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub < https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418814089>, or mute the thread < https://github.com/notifications/unsubscribe-auth/AE3LJZ-oohBq_iqeDnAgnJqgsOVJ4TC2ks5uYAn6gaJpZM4WbNxZ

.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub < https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418816525>, or mute the thread < https://github.com/notifications/unsubscribe-auth/AG7dmCZcbcho9UYEvt7jTzVkO5KEz4wfks5uYAu_gaJpZM4WbNxZ .

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/issues/238#issuecomment-418816993, or mute the thread https://github.com/notifications/unsubscribe-auth/ADXrTX8-kkraGbWzrIOtzyEFf7Iy_LqEks5uYAwUgaJpZM4WbNxZ .

DavidTingley commented 4 years ago

Is this fixed in /dev? If so, let's close and merge dev with master

dlevenstein commented 4 years ago

I recently fixed a bug in compile and was able to compile everything. Matlab 2019