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buzsakilab / buzcode

Code for internal lab sharing - polishing has started but is by no means complete
http://www.buzsakilab.com/
GNU General Public License v3.0
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TheStateEditor: accelerometer data from auxiliary.dat file #278

Open rhuszar opened 5 years ago

rhuszar commented 5 years ago

Does the most recent version of TheStateEditor include functionality to load accelerometer data from the auxiliary.dat file that is generated by the Intan? Apparently it does provided that the xyz coordinates from auxiliary.dat are included as additional channels in the lfp file. That said, bz_GetLFP does not have functionality to add these channels to the lfp file it generates - also, I am not sure it should given that these channels are not LFP. @samamckenzie has a workaround on his local machine that allows TheStateEditor to load motion data straight from the auxiliary.dat file when prompted to do so by the user. We thought this might be a nice addition to the program, but I am posting it here just in case a solution already exists and we're just not aware of it.

brendonw1 commented 5 years ago

I think at this level nothing exists. Feel free to add away.
That said I suggest EMGFromLFP... don't see why accelerometer is better.

samamckenzie commented 5 years ago

It's the actual movement signal. Maybe it's redundant, but it's very fast to load.

On Fri, Jan 11, 2019, 12:47 PM Brendon Watson <notifications@github.com wrote:

I think at this level nothing exists. Feel free to add away. That said I suggest EMGFromLFP... don't see why accelerometer is better.

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dlevenstein commented 5 years ago

It would be good to have a buzcode function that extracts the accelerometer from auxiliary.dat and saves it in a buzcode file (say, accel.behavior.mat) for subsequent analysis.

TheStateEditor (and anything else) can then load from that the same as it does EMGfromLFP

brendonw1 commented 5 years ago

I don't have time for this, but I welcome the idea

On Fri, Jan 11, 2019 at 12:56 PM Dan Levenstein notifications@github.com wrote:

It would be good to have a buzcode function that extracts the accelerometer from auxiliary.dat and saves it in a buzcode file (say, accel.behavior.mat) for subsequent analysis.

TheStateEditor (and anything else) can then load from that the same as it does EMGfromLFP

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samamckenzie commented 5 years ago

I already did it. Roman was just asking whether to push it back, which we will

On Fri, Jan 11, 2019, 1:01 PM Brendon Watson <notifications@github.com wrote:

I don't have time for this, but I welcome the idea

On Fri, Jan 11, 2019 at 12:56 PM Dan Levenstein notifications@github.com wrote:

It would be good to have a buzcode function that extracts the accelerometer from auxiliary.dat and saves it in a buzcode file (say, accel.behavior.mat) for subsequent analysis.

TheStateEditor (and anything else) can then load from that the same as it does EMGfromLFP

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brendonw1 commented 5 years ago

Great

On Fri, Jan 11, 2019 at 1:45 PM samamckenzie notifications@github.com wrote:

I already did it. Roman was just asking whether to push it back, which we will

On Fri, Jan 11, 2019, 1:01 PM Brendon Watson <notifications@github.com wrote:

I don't have time for this, but I welcome the idea

On Fri, Jan 11, 2019 at 12:56 PM Dan Levenstein < notifications@github.com> wrote:

It would be good to have a buzcode function that extracts the accelerometer from auxiliary.dat and saves it in a buzcode file (say, accel.behavior.mat) for subsequent analysis.

TheStateEditor (and anything else) can then load from that the same as it does EMGfromLFP

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rhuszar commented 5 years ago

Thanks for the suggestions! I will wrap Sam's code into a buzcode function that generates the accel.behavior.mat file. Then TheStateEditor can simply load its contents or run the requisite function, given that the user has decided they want to state score using Intan's accelerometer data. Will send to @dlevenstein and @DavidTingley for verification.

brendonw1 commented 5 years ago

Sounds good. Glad for the extra participation in the sleep scoring stuff. It's old code from Andres Grosmark, but pretty comprehensible I think/hope

Thanks for doing this

On Fri, Jan 11, 2019 at 3:12 PM rhuszar notifications@github.com wrote:

Thanks for the suggestions! I will wrap Sam's code into a buzcode function that generates the accel.behavior.mat file. Then TheStateEditor can simply load its contents or run the requisite function, given that the user has decided they want to state score using Intan's accelerometer data.

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dlevenstein commented 3 years ago

Did anyone work out an implementation of using the accelerometer in SleepScoreMaster?

brendonw1 commented 3 years ago

I am not aware of any such implementation yet

On Wed, Apr 21, 2021 at 2:48 PM Dan Levenstein @.***> wrote:

Did anyone work out an implementation of using the accelerometer in SleepScoreMaster?

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rhuszar commented 3 years ago

I use the accelerometer for the GUI to curate state scoring (I don't think this code is pushed), I have no sense of SleepScoreMaster, so I didn't play around with that.

bz_getIntanAccel is the function that extracts the accelerometer, with outputs ready to work with the sleep scoring code (i.e., 1Hz sampling rate)

On Wed, Apr 21, 2021 at 9:39 PM Brendon Watson @.***> wrote:

I am not aware of any such implementation yet

On Wed, Apr 21, 2021 at 2:48 PM Dan Levenstein @.***> wrote:

Did anyone work out an implementation of using the accelerometer in SleepScoreMaster?

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