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buzsakilab / buzcode

Code for internal lab sharing - polishing has started but is by no means complete
http://www.buzsakilab.com/
GNU General Public License v3.0
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Added functions for power-weighted Spike-Phase Coupling #310

Closed dlevenstein closed 5 years ago

dlevenstein commented 5 years ago

bz_GenSpikeLFPCouping takes as inputs spikes/lfp structures and calculates: -Power-weighted spike phase coupling -Rate-power correlation -Mutual information between power and ISI distribution With user-specified frequencies (Wavelet or band-pass filter). For all cells individually, and the population as a whole (can split E/I cell populations)

bz_PowerPhaseRateMap takes as inputs spikes and a filtered LFP signal and calculates: -rate as function of power/phase

raswanson commented 5 years ago

👍 Looks useful.

On Mar 19, 2019, at 12:12 PM, Dan Levenstein notifications@github.com wrote:

bz_GenSpikeLFPCouping takes as inputs spikes/lfp structures and calculates: -Power-weighted spike phase coupling -Rate-power correlation -Mutual information between power and ISI distribution With user-specified frequencies (Wavelet or band-pass filter). For all cells individually, and the population as a whole (can split E/I cell populations)

bz_PowerPhaseRateMap takes as inputs spikes and a filtered LFP signal and calculates: -rate as function of power/phase

You can view, comment on, or merge this pull request online at:

https://github.com/buzsakilab/buzcode/pull/310 https://github.com/buzsakilab/buzcode/pull/310 Commit Summary

Create bz_GenSpikeLFPCoupling.m added bz_PowerPhaseRateMap File Changes

A analysis/lfp_spikes/bz_GenSpikeLFPCoupling.m https://github.com/buzsakilab/buzcode/pull/310/files#diff-0 (595) A analysis/lfp_spikes/bz_PowerPhaseRatemap.m https://github.com/buzsakilab/buzcode/pull/310/files#diff-1 (181) Patch Links:

https://github.com/buzsakilab/buzcode/pull/310.patch https://github.com/buzsakilab/buzcode/pull/310.patch https://github.com/buzsakilab/buzcode/pull/310.diff https://github.com/buzsakilab/buzcode/pull/310.diff — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/pull/310, or mute the thread https://github.com/notifications/unsubscribe-auth/AWQufFI5EoQm4_1A8EAIXNi5VhYrqW7sks5vYQxxgaJpZM4b8iso.

dlevenstein commented 5 years ago

@rhuszar here it is. Ideally, we update bz_PowerPhaseRatemap to return the second plot we discussed - coupling as a function of power.

@AntonioFR8 you had also expressed interest in bz_PowerPhaseRatemap... here is the function to calculate it.

Let me know where things aren't clear so we can update the documentation for usability

rhuszar commented 5 years ago

Thanks! I'll implement the change and merge when I have it working.

AntonioFR8 commented 5 years ago

This is great Dan. I will test these functions and also finish writing and upload mines for LFP cross-frequency coupling

On Mar 19, 2019, at 12:16 PM, rhuszar notifications@github.com wrote:

Thanks! I'll implement the change and merge when I have it working.

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