Merging bz_getSpikes and bz_LoadPhy. Updated bz_firingMapAvg

valegarman commented 4 years ago

bz_firingMapAvg now includes a speed threshold.

For bz_LoadPhy, now the function accepts as an input

'sortingMethod', with the values 'kilosort' and 'clu'. By default tries to detect a kilosort folder or clu files.
- 'keepCluWave', that allows keeping the same waveform that previous version of bz_GetSpikes. By default (and with the kilosort option) it will take the waveform with the same parameters as Peter's CellExplorer. I have never used nor recorder clu/res/fet/spk files, so it would be worth testing back compatibility.

Things missing:

Get the waveform across all channels. In my understanding, it should be done by a call to a new separate function (ie bz_getWaveform, that it doesn't seem to exist), and it should create a different cellInfo.mat file. I will indicate this as TO DO.

dlevenstein commented 4 years ago

Looks good to me - will let others take a gander and then we can pull it in

dlevenstein commented 4 years ago

addressing issues #302 and #261

buzsakilab / buzcode