search

buzsakilab / buzcode

Code for internal lab sharing - polishing has started but is by no means complete
http://www.buzsakilab.com/
GNU General Public License v3.0
119 stars 128 forks source link

update monosyn code #366

Closed rhuszar closed 4 years ago

rhuszar commented 4 years ago

Updates: _bzGetMonoSynapticallyConnected - now includes option to save monosynaptic connections into a cellinfo file _bzMonoSynConvClick - fixed a typo that was causing bugs in detected number of connections

New functions: _bzfitPoissPlasticity - computes time-varying spike transmission (using a GLM) between monosynaptically connected neurons _bzGetSynapsembles - takes session, detects all connections, keeps the E to I (this info can be pulled from 3 different cell class file types, for now...), runs bz_fitPoissPlasticity, and extracts independent components using PCA/ICA

All other modifications/additions are utility functions that make the above code work.

AntonioFR8 commented 4 years ago

Thanks Roman, this looks great. I wold merge it for now and in the future try to unify the cell class structure to be unique for all buzcode function and peter's cell explorer.

rhuszar commented 4 years ago

Once the cell class stuff has been standardized (right now there are several ways people do it), I will update the function

AntonioFR8 commented 4 years ago

Ok, great. We can talk next week about it

On Nov 2, 2019, at 4:41 PM, rhuszar notifications@github.com wrote:

Once the cell class stuff has been standardized (right now there are several ways people do it), I will update the function

— You are receiving this because your review was requested. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/pull/366?email_source=notifications&email_token=ADHSQQ2KFBIHDIHPQ5MOTNTQRXQYJA5CNFSM4JIHYMBKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEC5ETQA#issuecomment-549079488, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADHSQQ7ZIJM56L4MAWD5QXDQRXQYJANCNFSM4JIHYMBA.

petersenpeter commented 4 years ago

We should schedule a meeting early next week to discuss the formats.

Den 2. nov. 2019 kl. 16.42 skrev AntonioFR notifications@github.com:

Ok, great. We can talk next week about it

On Nov 2, 2019, at 4:41 PM, rhuszar notifications@github.com wrote:

Once the cell class stuff has been standardized (right now there are several ways people do it), I will update the function

— You are receiving this because your review was requested. Reply to this email directly, view it on GitHub https://github.com/buzsakilab/buzcode/pull/366?email_source=notifications&email_token=ADHSQQ2KFBIHDIHPQ5MOTNTQRXQYJA5CNFSM4JIHYMBKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEC5ETQA#issuecomment-549079488, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADHSQQ7ZIJM56L4MAWD5QXDQRXQYJANCNFSM4JIHYMBA.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.